STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51125.1tRNA pseudouridine synthase B. (231 aa)    
Predicted Functional Partners:
AEI49394.1
Translation initiation factor IF-2.
 
 0.993
AEI51124.1
Riboflavin biosynthesis protein RibF.
  
 0.987
AEI50234.1
Ribosome-binding factor A.
  
  
 0.931
AEI49349.1
RNA binding S1 domain protein.
  
 
 0.927
AEI47030.1
GMP synthase (glutamine-hydrolyzing).
  
  
 0.910
AEI49393.1
NusA antitermination factor.
  
    0.886
AEI50969.1
Ribosomal protein S15.
  
 
 0.881
AEI50440.1
Ribosome maturation factor rimM.
 
  
 0.863
AEI50968.1
Polyribonucleotide nucleotidyltransferase.
 
  
 0.835
AEI51126.1
Undecaprenyl-diphosphatase.
       0.815
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.