STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51126.1Undecaprenyl-diphosphatase. (264 aa)    
Predicted Functional Partners:
AEI48774.1
Undecaprenyl pyrophosphate synthase.
     
 0.923
AEI48192.1
Phospho-N-acetylmuramoyl-pentapeptide- transferase.
    
 0.921
AEI49054.1
Glycosyl transferase, family 4, conserved region-containing protein.
    
 0.921
AEI51098.1
Phosphoesterase PA-phosphatase related protein.
  
 
 0.919
AEI47542.1
Diacylglycerol kinase.
    
 0.917
AEI51125.1
tRNA pseudouridine synthase B.
       0.815
AEI51124.1
Riboflavin biosynthesis protein RibF.
       0.738
AEI51127.1
Hypothetical protein.
       0.673
AEI51128.1
Protein of unknown function DUF214.
 
     0.652
AEI48017.1
S-adenosylmethionine:tRNAribosyltransferase-isom erase.
 
     0.548
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.