STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51128.1Protein of unknown function DUF214. (293 aa)    
Predicted Functional Partners:
AEI47712.1
Phosphonate-transporting ATPase.
 
 
 0.997
AEI47254.1
Peptidase M23.
 
 
 
 0.968
AEI47149.1
Hypothetical protein.
    
 
 0.811
AEI51127.1
Hypothetical protein.
 
     0.753
AEI50471.1
NLP/P60 protein.
 
 
 
 0.730
AEI50405.1
NLP/P60 protein.
 
 
 
 0.702
AEI51126.1
Undecaprenyl-diphosphatase.
 
     0.652
AEI47903.1
Hypothetical protein.
   
 
 0.637
AEI51771.1
Aminodeoxychorismate lyase.
 
  
 0.622
AEI51125.1
tRNA pseudouridine synthase B.
       0.595
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.