STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51138.1Hypothetical protein. (265 aa)    
Predicted Functional Partners:
AEI51137.1
Hypothetical protein.
 
     0.957
AEI48100.1
30S ribosomal protein S11.
   
  0.869
AEI48108.1
Ribosomal protein S5.
    
 0.869
AEI48121.1
Ribosomal protein S19.
    
  0.867
AEI48099.1
Ribosomal protein S4.
   
  0.861
AEI50969.1
Ribosomal protein S15.
   
  0.851
AEI47590.1
Ribosomal protein S2.
    
  0.832
AEI48835.1
Ribosomal protein S7.
   
 0.831
AEI48103.1
Translation initiation factor IF-1.
  
 
 0.827
AEI48119.1
Ribosomal protein S3.
   
 0.792
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.