STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI51147.1SNF2-related protein. (1284 aa)    
Predicted Functional Partners:
AEI48098.1
DNA-directed RNA polymerase subunit alpha.
   
 0.888
AEI48244.1
DNA-directed RNA polymerase subunit beta.
    
 0.887
AEI50587.1
Hypothetical protein.
    
 0.887
AEI48486.1
DNA polymerase I.
  
 0.838
AEI49939.1
Histone deacetylase superfamily.
    
 0.810
AEI48245.1
DNA-directed RNA polymerase subunit beta'.
   
  0.760
AEI47242.1
3'-5' exonuclease, PolB.
  
 0.752
AEI47860.1
DNA polymerase III, beta subunit.
  
 0.736
AEI48776.1
WD40 repeat-containing protein.
   
 0.734
AEI47259.1
DNA mismatch repair protein mutL.
  
 0.694
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.