STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI51154.1TonB-dependent receptor. (812 aa)    
Predicted Functional Partners:
AEI50334.1
OmpA/MotB domain protein.
     
 0.634
AEI50498.1
Hypothetical protein.
  
     0.627
AEI50588.1
Outer membrane assembly lipoprotein YfiO.
  
     0.551
AEI46829.1
TonB family protein.
 
 0.550
AEI50542.1
Membrane protein involved in aromatic hydrocarbon degradation.
  
   
 0.516
AEI51152.1
Hypothetical protein.
 
     0.507
AEI47598.1
TonB family protein.
  
   0.499
AEI51235.1
TonB-dependent receptor plug.
 
 
 0.499
AEI49584.1
Hypothetical protein.
  
     0.477
AEI47867.1
TonB family protein.
  
   0.467
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.