STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI51168.1Aspartate transaminase. (414 aa)    
Predicted Functional Partners:
AEI47198.1
Dihydroxy-acid dehydratase.
  
 
 0.916
AEI50656.1
Glutamate dehydrogenase (NAD(P)(+)).
  
 
 0.913
AEI48534.1
D-amino-acid transaminase.
  
 
 0.908
AEI49519.1
Branched-chain amino acid aminotransferase.
  
 
 0.908
AEI47057.1
2-isopropylmalate synthase.
  
 
 0.907
AEI46629.1
Alanine dehydrogenase.
     
 0.905
AEI51271.1
Alanine dehydrogenase.
     
 0.905
AEI51415.1
Aspartate transaminase.
     
 
0.900
AEI50463.1
Alanine racemase.
    
 0.862
AEI51223.1
2-oxoacid:acceptor oxidoreductase, alpha subunit.
  
 
 0.849
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.