STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51181.1Glycerate kinase. (379 aa)    
Predicted Functional Partners:
AEI47628.1
2-hydroxy-3-oxopropionate reductase.
  
 
 0.915
AEI50867.1
2,3-bisphosphoglycerate-independent phosphoglycerate mutase.
     
 0.915
AEI49202.1
Aldehyde Dehydrogenase.
   
 
 0.905
AEI48412.1
CMP/dCMP deaminase zinc-binding protein.
 
 
    0.903
AEI51180.1
Hypothetical protein.
       0.773
AEI48444.1
Allantoinase.
 
  
 0.709
AEI47928.1
Hypothetical protein.
   
    0.630
AEI51416.1
methylated-DNA/protein- cysteinemethyltransferase.
      0.611
AEI48207.1
UDP-N-acetylmuramoylalanine--D-glutamate ligase.
      0.576
AEI51182.1
Peptidoglycan glycosyltransferase.
       0.563
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.