STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51205.1Hypothetical protein. (382 aa)    
Predicted Functional Partners:
AEI51206.1
Phage/plasmid primase, P4 family.
 
   
 0.851
AEI51208.1
Hypothetical protein.
 
   
 0.704
AEI51211.1
DNA binding domain protein, excisionase family.
 
   
 0.698
AEI48152.1
GTP-binding protein engA.
   
  
 0.697
AEI51604.1
Replicative DNA helicase.
  
 
 0.669
AEI51204.1
Hypothetical protein.
       0.588
AEI50967.1
RNA polymerase, sigma 70 subunit, RpoD subfamily.
  
  
 0.521
AEI51876.1
Inosine-5'-monophosphate dehydrogenase.
  
  
 0.470
AEI48486.1
DNA polymerase I.
  
  
 0.457
AEI51210.1
Integrase family protein.
 
   
 0.451
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: medium (50%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.