STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI51215.1LVIVD repeat protein. (253 aa)    
Predicted Functional Partners:
AEI51216.1
LVIVD repeat protein.
     0.995
AEI51214.1
Hypothetical protein.
       0.786
AEI51217.1
Metallophosphoesterase.
       0.648
AEI51212.1
tRNA modification GTPase mnmE.
       0.543
AEI51213.1
Hypothetical protein.
       0.543
AEI51218.1
OmpA/MotB domain protein.
       0.529
AEI48493.1
Secretin/TonB short domain protein.
  
     0.469
AEI49687.1
Xylose isomerase domain-containing protein TIM barrel.
  
     0.413
AEI48266.1
FG-GAP repeat protein.
  
     0.408
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.