STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI51246.1RagB/SusD domain-containing protein. (538 aa)    
Predicted Functional Partners:
AEI51245.1
TonB-dependent receptor plug.
 
 
  0.941
AEI51240.1
TonB-dependent receptor plug.
 
 
   0.778
AEI51081.1
TonB-dependent receptor plug.
  
     0.775
AEI47304.1
TonB-dependent receptor plug.
  
     0.749
AEI47579.1
Hypothetical protein.
  
     0.740
AEI51241.1
RagB/SusD domain-containing protein.
 
     0.735
AEI51062.1
Glycosyl hydrolase 38 domain protein.
  
     0.708
AEI46878.1
RagB/SusD domain-containing protein.
  
     0.700
AEI51064.1
Protein of unknown function DUF6 transmembrane.
  
     0.697
AEI46877.1
TonB-dependent receptor plug.
  
     0.644
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.