STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51250.1RNA methyltransferase, TrmA family. (523 aa)    
Predicted Functional Partners:
AEI51251.1
Hypothetical protein.
       0.606
AEI50895.1
tRNA (guanine-N(7)-)-methyltransferase.
 
  
 0.559
AEI51249.1
Hypothetical protein.
       0.558
AEI47837.1
Septum formation protein Maf.
      0.537
AEI47394.1
Ribosomal protein L11 methyltransferase.
 
   
 0.517
AEI48569.1
Fmu (Sun) domain protein.
 
  
 0.516
AEI50431.1
tRNA/rRNA methyltransferase (SpoU).
 
  
 0.491
AEI51125.1
tRNA pseudouridine synthase B.
  
  
 0.488
AEI46842.1
TIM-barrel protein, nifR3 family.
 
  
 0.469
AEI48480.1
Phenylalanyl-tRNA synthetase beta chain.
 
  
 0.458
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.