Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51255.1CHRD domain containing protein. (158 aa)    
Predicted Functional Partners:
Runsl_4421
Na+:H+ antiporter, NhaA family.
  
    0.823
AEI48791.1
Nucleoside-triphosphatase rdgB.
   
   0.793
AEI51254.1
Hypothetical protein.
       0.553
AEI46722.1
Putative transcriptional regulator, Crp/Fnr family.
  
   
 0.518
AEI50909.1
Anti-sigma-K factor RskA.
 
   
 0.478
AEI50808.1
Alpha/beta hydrolase fold protein.
  
     0.446
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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