STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI51256.1Aconitate hydratase. (757 aa)    
Predicted Functional Partners:
AEI51866.1
Citrate synthase I.
  
 0.994
AEI47513.1
Isocitrate dehydrogenase, NADP-dependent.
  
 0.990
AEI49754.1
Isocitrate dehydrogenase.
 
 0.955
AEI51704.1
50S ribosomal protein L19.
   
 
 0.892
AEI47167.1
Ribonuclease 3.
   
 
 0.884
AEI48102.1
50S ribosomal protein L36.
   
 
 0.883
AEI48113.1
Ribosomal protein L5.
   
 
 0.882
AEI51677.1
30S ribosomal protein S6.
   
 
 0.882
AEI47290.1
50S ribosomal protein L28.
   
   0.881
AEI49088.1
50S ribosomal protein L32.
   
   0.880
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.