STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51261.1DNA gyrase, B subunit. (656 aa)    
Predicted Functional Partners:
AEI50901.1
DNA gyrase, A subunit.
 
 0.998
AEI50917.1
DNA topoisomerase (ATP-hydrolyzing).
 
 
 0.985
AEI49455.1
Chaperone protein dnaJ.
 
  
 0.844
AEI51312.1
Chaperone protein dnaK.
  
 
 
 0.810
AEI49510.1
DNA topoisomerase.
   
 
 0.798
AEI51394.1
4-hydroxythreonine-4-phosphate dehydrogenase.
 
 
    0.787
AEI51125.1
tRNA pseudouridine synthase B.
 
 
 0.764
AEI46461.1
Chromosomal replication initiator protein dnaA.
  
 0.674
AEI47487.1
seryl-tRNA synthetase.
 
   
 0.638
AEI48201.1
Cell division protein FtsZ.
 
  
 0.638
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: medium (64%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.