STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51293.1Helix-turn-helix domain protein. (273 aa)    
Predicted Functional Partners:
AEI51294.1
Hypothetical protein.
       0.727
AEI47335.1
Putative membrane protein.
  
     0.682
AEI46540.1
ATP-dependent Clp protease adaptor protein ClpS.
  
     0.591
AEI51595.1
Hypothetical protein.
  
     0.508
AEI51295.1
YopX protein.
       0.498
AEI48464.1
Hypothetical protein.
  
     0.492
AEI48636.1
CBS domain containing protein.
  
     0.478
AEI48271.1
Putative membrane protein.
  
     0.469
AEI49398.1
Hypothetical protein.
  
     0.450
AEI49776.1
Hypothetical protein.
  
     0.443
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.