Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51311.1Smr protein/MutS2. (325 aa)    
Predicted Functional Partners:
AEI48099.1
Ribosomal protein S4.
    
   0.722
AEI47031.1
Hypothetical protein.
  
     0.662
Runsl_5229
Hypothetical protein.
  
     0.601
AEI47738.1
Outer membrane lipoprotein carrier protein LolA.
  
     0.575
AEI49539.1
D-alanine--D-alanine ligase.
  
   
 0.566
AEI51310.1
ATP-dependent DNA helicase, RecQ family.
     
 0.553
AEI46509.1
PHP domain protein.
  
  
 0.546
AEI50892.1
Sporulation domain-containing protein.
  
     0.539
AEI51720.1
50S ribosomal protein L35.
   
   0.539
AEI51721.1
50S ribosomal protein L20.
   
   0.539
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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