STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51322.1DNA primase. (691 aa)    
Predicted Functional Partners:
AEI51604.1
Replicative DNA helicase.
 0.929
AEI50967.1
RNA polymerase, sigma 70 subunit, RpoD subfamily.
  
 0.888
AEI50441.1
tRNA (guanine-N(1)-)-methyltransferase.
 
  
 0.703
AEI49479.1
DNA polymerase III, alpha subunit.
 
  
 0.702
AEI48152.1
GTP-binding protein engA.
   
  
 0.697
AEI48486.1
DNA polymerase I.
 
  
 0.695
Runsl_3621
DNA polymerase III gamma/tau subunits-like protein.
 
  
 0.648
AEI47167.1
Ribonuclease 3.
 
  
 0.647
AEI49393.1
NusA antitermination factor.
 
    0.641
AEI48490.1
Protein-export membrane protein SecD.
 
  
 0.639
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.