STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI51325.1Iron-sulfur cluster binding protein. (314 aa)    
Predicted Functional Partners:
AEI51416.1
methylated-DNA/protein- cysteinemethyltransferase.
      0.907
AEI51467.1
HAD-superfamily hydrolase, subfamily IA, variant 3.
      0.863
AEI51593.1
Methionine synthase.
 
   
 0.651
AEI50924.1
S-adenosylmethionine:tRNAribosyltransferase-isom erase.
 
   
 0.574
AEI51326.1
Transposase mutator type.
     
 0.539
AEI48017.1
S-adenosylmethionine:tRNAribosyltransferase-isom erase.
 
   
 0.521
AEI51324.1
Protein of unknown function DUF1311.
       0.520
AEI51323.1
Membrane dipeptidase.
       0.456
AEI47214.1
Queuine tRNA-ribosyltransferase.
 
  
 0.436
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.