STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51332.1Hypothetical protein. (323 aa)    
Predicted Functional Partners:
AEI51333.1
Galactonate dehydratase.
 
     0.898
AEI51334.1
Galactonate dehydratase.
 
     0.686
AEI48759.1
Xylose isomerase domain-containing protein TIM barrel.
  
     0.677
AEI51331.1
Quinoprotein glucose dehydrogenase.
 
  
 0.647
AEI50937.1
GHMP kinase.
 
 
 0.577
AEI48541.1
Protein of unknown function DUF2261, transmembrane.
  
     0.573
AEI51300.1
Xylose isomerase domain-containing protein TIM barrel.
  
     0.571
AEI46816.1
Peptidase M14 carboxypeptidase A.
  
     0.558
AEI48431.1
Hypothetical protein.
  
     0.545
AEI48209.1
Hypothetical protein.
 
  
 0.518
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.