STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51344.1DEAD/DEAH box helicase domain protein. (419 aa)    
Predicted Functional Partners:
AEI50442.1
YjeF-related protein.
  
 0.712
AEI50968.1
Polyribonucleotide nucleotidyltransferase.
  
 
 0.704
AEI47122.1
Translation elongation factor G.
   
 0.649
AEI48099.1
Ribosomal protein S4.
  
 0.606
AEI48125.1
50S ribosomal protein L3.
   
 
 0.605
AEI48124.1
Ribosomal protein L4/L1e.
   
 0.590
AEI49349.1
RNA binding S1 domain protein.
   
 0.573
AEI48108.1
Ribosomal protein S5.
   
 0.560
AEI47592.1
Ribosomal protein L13.
   
 0.534
AEI48100.1
30S ribosomal protein S11.
   
 0.534
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.