STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51347.1Protein of unknown function DUF1680. (803 aa)    
Predicted Functional Partners:
AEI49750.1
alpha-L-arabinofuranosidase domain protein.
 
   
 0.753
AEI51346.1
Peptidase s9b dipeptidylpeptidase IV domain protein.
 
     0.616
AEI48972.1
alpha-L-rhamnosidase.
 
    0.590
AEI51348.1
Hypothetical protein.
       0.586
AEI46897.1
alpha-L-rhamnosidase.
 
    0.512
AEI49749.1
L-arabinose isomerase.
 
     0.448
AEI51349.1
Protein of unknown function DUF306 Meta and HslJ.
       0.420
AEI48683.1
Glycoside hydrolase family 29 (alpha-L-fucosidase).
  
     0.415
AEI47825.1
Xylan 1,4-beta-xylosidase.
  
     0.412
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.