STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51351.1FkbM family methyltransferase. (214 aa)    
Predicted Functional Partners:
AEI51350.1
Hypothetical protein.
       0.762
AEI51352.1
Polysaccharide biosynthesis protein.
 
     0.725
AEI51354.1
Glycosyl transferase group 1.
   
   0.611
AEI50195.1
Cupin 2 conserved barrel domain protein.
  
     0.601
AEI51353.1
UDP-N-acetylglucosamine 2-epimerase.
       0.593
AEI48776.1
WD40 repeat-containing protein.
  
 
 0.474
AEI51886.1
Heat shock protein Hsp90.
   
 0.426
AEI49124.1
TetR family transcriptional regulator.
  
     0.407
AEI49455.1
Chaperone protein dnaJ.
    
 0.402
AEI47558.1
alanyl-tRNA synthetase.
   
 0.401
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.