STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51377.1Hypothetical protein. (230 aa)    
Predicted Functional Partners:
AEI51378.1
NmrA family protein.
 
     0.908
AEI51376.1
Putative transcriptional regulator, Crp/Fnr family.
 
     0.762
Runsl_2774
Alpha/beta hydrolase fold protein.
  
     0.570
AEI51375.1
Hypothetical protein.
       0.556
AEI46749.1
Phytanoyl-CoA dioxygenase.
  
     0.535
AEI50045.1
Phospholipid/glycerol acyltransferase.
  
     0.470
AEI49124.1
TetR family transcriptional regulator.
  
     0.459
Runsl_0216
NAD-dependent epimerase/dehydratase.
 
     0.407
AEI50114.1
HAD-superfamily hydrolase, subfamily IIA.
  
     0.401
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.