STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI51394.14-hydroxythreonine-4-phosphate dehydrogenase. (361 aa)    
Predicted Functional Partners:
AEI47043.1
Pyridoxine 5'-phosphate synthase.
 
 
 0.919
AEI48530.1
Phosphoserine transaminase.
     
 0.917
AEI46653.1
Threonine synthase.
    
 0.905
AEI51912.1
Aminotransferase class V.
     
  0.900
AEI51398.1
Ribosomal RNA small subunit methyltransferase A.
 
  
 0.800
AEI51261.1
DNA gyrase, B subunit.
 
      0.787
AEI49066.1
Dihydrofolate reductase.
    
 0.709
AEI51393.1
Phosphoglycerate dehydrogenase.
     
 0.619
AEI48420.1
Thiamine-monophosphate kinase.
  
   
 0.487
AEI48513.1
GTP cyclohydrolase-2.
  
  
 0.436
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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