STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51394.14-hydroxythreonine-4-phosphate dehydrogenase. (361 aa)    
Predicted Functional Partners:
AEI47043.1
Pyridoxine 5'-phosphate synthase.
 
 
 0.916
AEI51261.1
DNA gyrase, B subunit.
 
 
    0.787
AEI51398.1
Ribosomal RNA small subunit methyltransferase A.
 
  
 0.757
AEI49066.1
Dihydrofolate reductase.
    
 0.715
AEI51393.1
Phosphoglycerate dehydrogenase.
     
 0.660
AEI48513.1
GTP cyclohydrolase-2.
  
  
 0.548
AEI48420.1
Thiamine-monophosphate kinase.
  
   
 0.517
AEI48931.1
NAD+ synthetase.
  
   
 0.429
AEI49543.1
Riboflavin biosynthesis protein RibD.
   
  
 0.417
AEI50235.1
Chorismate mutase.
 
   
 0.412
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.