STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51398.1Ribosomal RNA small subunit methyltransferase A. (270 aa)    
Predicted Functional Partners:
AEI48108.1
Ribosomal protein S5.
 
 
 0.905
AEI47591.1
Ribosomal protein S9.
 
 
 0.897
AEI48111.1
Ribosomal protein S8.
 
 
 0.890
AEI48099.1
Ribosomal protein S4.
   
 
 0.884
AEI48100.1
30S ribosomal protein S11.
  
 
 0.878
AEI47123.1
30S ribosomal protein S10.
 
 
 0.865
AEI48835.1
Ribosomal protein S7.
  
 
 0.861
AEI48119.1
Ribosomal protein S3.
 
 
 0.855
AEI48836.1
Ribosomal protein S12.
  
 
 0.855
AEI48116.1
30S ribosomal protein S17.
  
 
 0.849
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.