STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51430.1Pseudouridine synthase Rsu. (531 aa)    
Predicted Functional Partners:
AEI48152.1
GTP-binding protein engA.
 
  
 0.898
AEI49373.1
Cytidylate kinase.
  
 0.805
AEI47250.1
Exodeoxyribonuclease III Xth.
  
    0.788
AEI48154.1
GTP-binding protein Era-like-protein.
 
    0.651
AEI51125.1
tRNA pseudouridine synthase B.
 
   
 0.579
AEI47958.1
Signal recognition particle-docking protein FtsY.
 
    0.535
AEI51431.1
Glycosyl transferase group 1.
       0.527
AEI51554.1
ABC transporter related protein.
 
   
 0.511
AEI51429.1
acetoacetyl-CoA synthase.
       0.486
AEI51794.1
Signal recognition particle protein.
 
     0.464
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.