STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51432.1Hypothetical protein. (457 aa)    
Predicted Functional Partners:
AEI51433.1
TonB-dependent receptor.
 
     0.935
AEI50987.1
Hypothetical protein.
 
     0.707
AEI47888.1
Peptidase M28.
  
     0.554
AEI47656.1
Hypothetical protein.
  
     0.538
AEI48831.1
Protein of unknown function, Porph ging.
  
     0.532
AEI49513.1
Peptidase M14 carboxypeptidase A.
  
     0.467
AEI50777.1
Regulatory protein TetR.
  
     0.467
AEI50981.1
Hypothetical protein.
 
     0.424
AEI51700.1
Hypothetical protein.
  
     0.416
AEI48070.1
Hypothetical protein.
  
     0.412
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.