STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51433.1TonB-dependent receptor. (757 aa)    
Predicted Functional Partners:
AEI51432.1
Hypothetical protein.
 
     0.935
AEI50987.1
Hypothetical protein.
 
     0.578
AEI49778.1
Glycosyl transferase family 2.
  
     0.575
AEI47888.1
Peptidase M28.
  
     0.565
AEI50777.1
Regulatory protein TetR.
  
     0.501
AEI49513.1
Peptidase M14 carboxypeptidase A.
  
     0.500
AEI51434.1
Hypothetical protein.
       0.442
AEI47656.1
Hypothetical protein.
  
     0.439
AEI48070.1
Hypothetical protein.
  
     0.421
AEI49514.1
Peptidase M14 carboxypeptidase A.
  
     0.416
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.