STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51436.1Cytochrome c class I. (285 aa)    
Predicted Functional Partners:
AEI51546.1
Cytochrome c oxidase, cbb3-type, subunit I.
  
 
 0.934
AEI49351.1
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
  
 
 0.858
AEI51151.1
Hypothetical protein.
  
   0.722
AEI47975.1
Hypothetical protein.
  
     0.690
AEI48932.1
Hypothetical protein.
  
     0.668
AEI49153.1
Hypothetical protein.
  
     0.522
AEI48946.1
FAD dependent oxidoreductase.
  
 
 0.494
AEI51437.1
NIPSNAP family containing protein.
       0.486
AEI47444.1
Rieske (2Fe-2S) iron-sulfur domain protein.
  
 
 0.476
AEI51481.1
Rieske (2Fe-2S) iron-sulfur domain protein.
  
 
 0.476
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.