STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51454.1Polynucleotide adenylyltransferase/metal dependent phosphohydrolase. (471 aa)    
Predicted Functional Partners:
AEI51898.1
Dihydrodipicolinate reductase.
  
  
 0.867
AEI48930.1
Methylglyoxal synthase.
  
  
 0.852
AEI48135.1
Hypothetical protein.
  
     0.730
AEI49811.1
Peptidoglycan glycosyltransferase.
 
   
 0.692
AEI51897.1
Hypothetical protein.
  
     0.652
AEI49543.1
Riboflavin biosynthesis protein RibD.
  
    0.647
AEI51718.1
Membrane-associated zinc metalloprotease.
  
     0.628
AEI51850.1
tRNA dimethylallyltransferase.
 
  
 0.624
AEI47923.1
Tetratricopeptide TPR_2 repeat-containing protein.
 
     0.619
AEI50968.1
Polyribonucleotide nucleotidyltransferase.
 
 
 0.604
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.