STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51455.1Protein of unknown function DUF2480. (176 aa)    
Predicted Functional Partners:
AEI48136.1
Hypothetical protein.
  
     0.773
AEI50962.1
Gliding motility-associated protein GldC.
  
     0.763
AEI46485.1
Hypothetical protein.
  
     0.744
AEI47039.1
acyl-CoA reductase.
  
     0.713
AEI47874.1
GH3 auxin-responsive promoter.
  
     0.698
AEI47482.1
UPF0747 protein.
  
     0.677
AEI49088.1
50S ribosomal protein L32.
  
     0.643
AEI49263.1
Cellulase.
  
     0.630
AEI46540.1
ATP-dependent Clp protease adaptor protein ClpS.
  
     0.606
AEI49789.1
Peptidase M1 membrane alanine aminopeptidase.
  
     0.583
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.