STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51478.1YceI family protein. (206 aa)    
Predicted Functional Partners:
AEI51477.1
Regulatory protein MarR.
       0.558
AEI48716.1
YceI family protein.
  
     0.537
AEI47876.1
YceI family protein.
  
     0.530
AEI51479.1
MORN repeat-containing protein.
       0.511
AEI49351.1
Molybdopterin oxidoreductase, iron-sulfur binding subunit.
  
     0.476
AEI49353.1
Quinol:cytochrome c oxidoreductase membrane protein.
  
     0.470
AEI49355.1
Hypothetical protein.
  
     0.463
AEI49350.1
Cytochrome c class I.
  
     0.450
AEI51480.1
Protein of unknown function DUF72.
       0.447
AEI49352.1
Polysulphide reductase NrfD.
  
     0.436
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.