STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51483.1YceI family protein. (185 aa)    
Predicted Functional Partners:
AEI51482.1
Hypothetical protein.
 
     0.927
AEI51481.1
Rieske (2Fe-2S) iron-sulfur domain protein.
       0.505
AEI48253.1
Protein of unknown function DUF541.
  
     0.503
AEI51484.1
Protein of unknown function DUF1080.
       0.498
AEI51562.1
Transcription elongation factor.
  
     0.445
AEI48228.1
Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen.
  
     0.440
AEI49656.1
Response regulator receiver protein.
  
    0.428
AEI49779.1
Carbohydrate binding family 6.
  
     0.417
AEI49778.1
Glycosyl transferase family 2.
  
     0.403
AEI48573.1
Hypothetical protein.
  
     0.400
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.