STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51492.1Putative signal transduction histidine kinase. (420 aa)    
Predicted Functional Partners:
AEI51493.1
Two component transcriptional regulator, LuxR family.
 
 
 0.920
Runsl_0960
Two component transcriptional regulator, LuxR family.
 
 
 0.830
AEI48839.1
Two component transcriptional regulator, LuxR family.
 
 
 0.830
AEI49250.1
Two component transcriptional regulator, LuxR family.
 
 
 0.830
AEI50460.1
Two component transcriptional regulator, LuxR family.
 
 
 0.830
AEI48786.1
Two component transcriptional regulator, LuxR family.
 
 
 0.825
AEI49639.1
Transcriptional regulator, LuxR family.
 
 
 0.824
AEI51278.1
ATP-dependent transcriptional regulator, MalT-like, LuxR family.
 
   
 0.744
AEI51491.1
Hypothetical protein.
       0.678
AEI51490.1
Transposase IS204/IS1001/IS1096/IS1165 family protein.
       0.412
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.