STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51505.1Peptidase C14 caspase catalytic subunit p20. (291 aa)    
Predicted Functional Partners:
AEI51506.1
Protein serine/threonine phosphatase.
 
     0.801
AEI51507.1
Forkhead-associated protein.
       0.773
AEI51509.1
Forkhead-associated protein.
 
     0.750
AEI51508.1
Hypothetical protein.
       0.746
AEI51510.1
PKD domain containing protein.
       0.620
AEI51511.1
ATPase AAA-2 domain protein.
       0.411
AEI46969.1
HNH endonuclease.
  
     0.409
AEI51512.1
Hypothetical protein.
       0.408
AEI48927.1
XisI protein.
  
     0.407
AEI48676.1
XisI protein.
  
     0.400
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.