STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51517.1Rhs element Vgr protein. (597 aa)    
Predicted Functional Partners:
AEI51524.1
PAAR repeat-containing protein.
 
   
 0.921
AEI51515.1
Hypothetical protein.
  
   0.857
AEI51519.1
GPW/gp25 family protein.
  
  
 0.793
AEI51518.1
Hypothetical protein.
       0.746
AEI51520.1
Hypothetical protein.
  
  
 0.717
AEI51521.1
Hypothetical protein.
  
  
 0.709
AEI51523.1
Hypothetical protein.
  
  
 0.705
AEI51522.1
Hypothetical protein.
       0.592
AEI51516.1
Hypothetical protein.
       0.566
AEI51511.1
ATPase AAA-2 domain protein.
 
  
 0.537
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.