STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51540.1Response regulator receiver protein. (520 aa)    
Predicted Functional Partners:
AEI48044.1
Integral membrane sensor signal transduction histidine kinase.
 
 
 
 0.789
AEI48951.1
Hypothetical protein.
  
   
 0.762
AEI48185.1
Hypothetical protein.
 
 
   0.737
AEI48772.1
Outer membrane chaperone Skp (OmpH).
  
     0.726
AEI50542.1
Membrane protein involved in aromatic hydrocarbon degradation.
  
     0.698
AEI48952.1
Hypothetical protein.
 
  
 0.679
AEI49399.1
Metallophosphoesterase.
  
     0.668
AEI50585.1
Hypothetical protein.
  
     0.667
AEI48195.1
Hypothetical protein.
  
     0.621
AEI47899.1
Hypothetical protein.
  
     0.617
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.