STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AEI51549.1Hypothetical protein. (144 aa)    
Predicted Functional Partners:
AEI51546.1
Cytochrome c oxidase, cbb3-type, subunit I.
 
 
 0.998
AEI51548.1
Cytochrome c oxidase accessory protein CcoG.
 
  
 0.930
AEI51547.1
Cytochrome c class I.
 
 
 0.905
AEI51545.1
Cytochrome oxidase maturation protein, cbb3-type.
 
  
 0.889
AEI51550.1
Integral membrane protein.
 
     0.846
AEI51543.1
Copper-exporting ATPase.
 
   
 0.816
AEI51551.1
Oxygen-independent coproporphyrinogen III oxidase.
 
    0.671
AEI49350.1
Cytochrome c class I.
  
   0.565
AEI46472.1
Membrane-bound dehydrogenase domain protein.
   
   0.486
AEI46568.1
Cytochrome c class I.
 
 
 0.476
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.