STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI51576.1Glycoside hydrolase family 43. (469 aa)    
Predicted Functional Partners:
AEI46821.1
Peptidase M14 carboxypeptidase A.
  
     0.664
AEI51177.1
Hypothetical protein.
  
     0.615
AEI51575.1
Hypothetical protein.
       0.607
AEI49750.1
alpha-L-arabinofuranosidase domain protein.
 
  
 0.574
AEI48209.1
Hypothetical protein.
 
 
 0.562
AEI51708.1
Methyltransferase type 11.
  
    0.555
AEI47872.1
Hypothetical protein.
  
     0.554
AEI48964.1
Alpha-glucuronidase.
 
   
 0.540
AEI48759.1
Xylose isomerase domain-containing protein TIM barrel.
  
     0.520
AEI47629.1
Mannonate dehydratase.
 
     0.494
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.