STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI51579.1Biotin/lipoyl attachment domain-containing protein. (314 aa)    
Predicted Functional Partners:
AEI51580.1
Protein of unknown function DUF214.
 
     0.936
AEI51581.1
Outer membrane efflux protein.
 
 0.889
AEI51578.1
Phosphonate-transporting ATPase.
 
 
 0.826
AEI51577.1
Regulatory protein MarR.
 
  
 0.795
AEI47540.1
TonB-dependent receptor plug.
  
  
 0.616
AEI49153.1
Hypothetical protein.
  
     0.585
AEI48072.1
Protein of unknown function DUF2254, membrane.
  
     0.580
AEI47265.1
Regulatory protein MarR.
 
  
 0.571
AEI48425.1
Outer membrane efflux protein.
 
 0.565
AEI48058.1
Outer membrane efflux protein.
 
 0.560
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.