STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEI51665.1Hypothetical protein. (397 aa)    
Predicted Functional Partners:
AEI51886.1
Heat shock protein Hsp90.
   
 0.625
AEI48776.1
WD40 repeat-containing protein.
   
 0.613
AEI47558.1
alanyl-tRNA synthetase.
   
 0.604
AEI51664.1
Putative transcriptional regulator, Crp/Fnr family.
   
   0.551
AEI51666.1
Hypothetical protein.
       0.493
AEI49455.1
Chaperone protein dnaJ.
    
 0.459
AEI48098.1
DNA-directed RNA polymerase subunit alpha.
   
 0.455
AEI51662.1
Putative transcriptional regulator, Crp/Fnr family.
   
   0.454
AEI49180.1
Transcriptional regulator, AraC family.
  
 0.451
AEI49352.1
Polysulphide reductase NrfD.
  
     0.448
Your Current Organism:
Runella slithyformis
NCBI taxonomy Id: 761193
Other names: R. slithyformis DSM 19594, Runella slithyformis DSM 19594, Runella slithyformis str. DSM 19594, Runella slithyformis strain DSM 19594
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