PPTG_07422 protein (Phytophthora parasitica)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

PPTG_07422

SSD domain-containing protein. (1492 aa)

Predicted Functional Partners:

PPTG_17628

0.610

PPTG_08077

0.446

PPTG_06094

0.446

PPTG_04457

0.446

Your Current Organism:

Phytophthora parasitica

NCBI taxonomy Id: 761204
Other names: P. parasitica INRA-310, Phytophthora parasitica INRA-310

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
PPTG_04457	PPTG_07422	W2R3F8	W2QQ19	Ig-like domain-containing protein.	SSD domain-containing protein.	0.446
PPTG_06094	PPTG_07422	W2QX49	W2QQ19	Peptidase_S8 domain-containing protein.	SSD domain-containing protein.	0.446
PPTG_07422	PPTG_04457	W2QQ19	W2R3F8	SSD domain-containing protein.	Ig-like domain-containing protein.	0.446
PPTG_07422	PPTG_06094	W2QQ19	W2QX49	SSD domain-containing protein.	Peptidase_S8 domain-containing protein.	0.446
PPTG_07422	PPTG_08077	W2QQ19	W2QKT4	SSD domain-containing protein.	Peptidase_S8 domain-containing protein.	0.446
PPTG_07422	PPTG_17628	W2QQ19	W2PLT8	SSD domain-containing protein.	Uncharacterized protein.	0.610
PPTG_08077	PPTG_07422	W2QKT4	W2QQ19	Peptidase_S8 domain-containing protein.	SSD domain-containing protein.	0.446
PPTG_17628	PPTG_07422	W2PLT8	W2QQ19	Uncharacterized protein.	SSD domain-containing protein.	0.610