Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ALO48085.1DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (150 aa)    
Predicted Functional Partners:
ALO47840.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.752
ALO49104.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.742
ALO49012.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.688
ALO49228.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.680
ALO49750.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.679
ALO49504.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.676
ALO49080.1
Conjugal transfer protein TraN; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.674
ALO49051.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.671
ALO48803.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.660
ALO48958.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.637
Your Current Organism:
Prevotella enoeca
NCBI taxonomy Id: 76123
Other names: ATCC 51261, CIP 104472, JCM 12259, NCTC 13068, P. enoeca, VPI D194A-25A
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