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The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ALO48189.1Conjugal transfer protein TraC; Derived by automated computational analysis using gene prediction method: Protein Homology. (173 aa)    
Predicted Functional Partners:
ALO48188.1
Conjugal transfer protein TraA; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.776
ALO48191.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.776
ALO48190.1
Conjugal transfer protein TraC; Derived by automated computational analysis using gene prediction method: Protein Homology.
      
0.773
ALO48192.1
Conjugal transfer protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.482
ALO48193.1
Conjugal transfer protein TraF; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.481
ALO48194.1
Conjugal transfer protein TraG; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.479
Your Current Organism:
Prevotella enoeca
NCBI taxonomy Id: 76123
Other names: ATCC 51261, CIP 104472, JCM 12259, NCTC 13068, P. enoeca, VPI D194A-25A
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