Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
ALO48241.1Topoisomerase; Derived by automated computational analysis using gene prediction method: Protein Homology. (688 aa)    
Predicted Functional Partners:
ALO48239.1
DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.787
ALO48240.1
MerR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.786
ALO48242.1
Excisionase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.780
ALO48909.1
Conjugal transfer protein TraO; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.726
ALO48264.1
Conjugal transfer protein TraO; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.717
ALO48608.1
Conjugal transfer protein TraO; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.714
ALO48201.1
Conjugal transfer protein TraO; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.712
ALO49918.1
Conjugal transfer protein TraA; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.693
ALO48181.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.669
ALO48935.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.661
Your Current Organism:
Prevotella enoeca
NCBI taxonomy Id: 76123
Other names: ATCC 51261, CIP 104472, JCM 12259, NCTC 13068, P. enoeca, VPI D194A-25A
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