Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ALO49013.1Cell envelope biogenesis protein LolA; Derived by automated computational analysis using gene prediction method: Protein Homology. (204 aa)    
Predicted Functional Partners:
ALO49012.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.845
ALO49014.1
Cell division protein FtsK; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.781
ALO47694.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 
 0.729
ALO49503.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.679
ALO47733.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
    0.663
ALO49138.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.660
ALO49543.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.635
ALO48232.1
LPS export ABC transporter periplasmic protein LptC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.629
ALO49380.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.616
ALO49139.1
Phage tail protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.615
Your Current Organism:
Prevotella enoeca
NCBI taxonomy Id: 76123
Other names: ATCC 51261, CIP 104472, JCM 12259, NCTC 13068, P. enoeca, VPI D194A-25A
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