STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RR48_04904Putative tRNA pseudouridine synthase 2. (306 aa)    
Predicted Functional Partners:
RR48_03509
Nucleolar protein 56.
   
 
 0.993
RR48_07199
rRNA 2'-O-methyltransferase fibrillarin.
   
 
 0.989
RR48_06802
Nucleolar protein 58.
  
 
 0.988
RR48_06767
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
   
 0.986
RR48_11941
H/ACA ribonucleoprotein complex subunit 3.
   
 0.977
RR48_03616
Protein SHQ1-like.
   
 0.974
RR48_14657
Pescadillo homolog; Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit; Belongs to the pescadillo family.
   
 
 0.938
RR48_05683
Ribosome biogenesis protein BOP1-like.
   
 
 0.927
RR48_03951
Telomerase Cajal body protein 1.
    
 0.907
RR48_13870
Protein RRP5-like.
  
 
 0.886
Your Current Organism:
Papilio machaon
NCBI taxonomy Id: 76193
Other names: Old World swallowtail, P. machaon, artemisia swallowtail, common yellow swallowtail
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