STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RR48_06755Ras-related protein Rab-5B. (232 aa)    
Predicted Functional Partners:
RR48_03380
Rab5 GDP/GTP exchange factor.
   
 0.993
RR48_00006
VPS9 domain-containing protein.
   
 0.992
RR48_12575
Rabenosyn-5.
   
 0.980
RR48_09339
Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.
   
 0.963
RR48_14888
Cyclin-G-associated kinase.
   
 0.957
RR48_04237
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 
 0.942
RR48_09382
Rab GTPase-binding effector protein 1.
    
 0.917
RR48_09381
Rab GTPase-binding effector protein 1.
    
 0.917
RR48_05426
Vacuolar protein sorting-associated protein 45; Belongs to the STXBP/unc-18/SEC1 family.
 
  
 0.885
RR48_07602
Vacuolar protein sorting-associated protein 8-like.
    
 
 0.879
Your Current Organism:
Papilio machaon
NCBI taxonomy Id: 76193
Other names: Old World swallowtail, P. machaon, artemisia swallowtail, common yellow swallowtail
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