STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RR48_12042Pre-mRNA-processing factor 39. (947 aa)    
Predicted Functional Partners:
RR48_06927
tRNA selenocysteine 1-associated protein 1.
  
 
 0.962
RR48_03719
RNA-binding protein 25.
   
 
 0.960
RR48_12858
Putative RNA-binding protein Luc7-like 2.
   
 
 0.951
RR48_14490
U1 small nuclear ribonucleoprotein C; Component of the U1 snRNP, which is essential for recognition of the pre-mRNA 5' splice-site and the subsequent assembly of the spliceosome. U1-C is directly involved in initial 5' splice-site recognition for both constitutive and regulated alternative splicing. The interaction with the 5' splice-site seems to precede base-pairing between the pre-mRNA and the U1 snRNA; Belongs to the U1 small nuclear ribonucleoprotein C family.
   
 
 0.939
RR48_14965
U2 small nuclear ribonucleoprotein A.
    
 
 0.938
RR48_02600
Small nuclear ribonucleoprotein-associated protein B.
    
 
 0.936
RR48_10222
Splicing factor 3B subunit 1.
   
 
 0.922
RR48_02265
U1 small nuclear ribonucleoprotein 70 kDa.
   
 
 0.906
RR48_04912
U11/U12 small nuclear ribonucleoprotein 35 kDa protein.
   
 
 0.906
RR48_07866
Luc7-like protein 3.
   
 
 0.903
Your Current Organism:
Papilio machaon
NCBI taxonomy Id: 76193
Other names: Old World swallowtail, P. machaon, artemisia swallowtail, common yellow swallowtail
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